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Information Flow and Optimization in Transcriptional Regulation
Gašper Tkačik, Curtis G. Callan, Jr. and William Bialek
Proceedings of the National Academy of Sciences of the United States of America
Vol. 105, No. 34 (Aug. 26, 2008), pp. 12265-12270
Published by: National Academy of Sciences
Stable URL: http://www.jstor.org/stable/25463848
Page Count: 6
You can always find the topics here!Topics: Input output, Embryos, Signal noise, Data transmission, Genes, Information retrieval noise, Gene expression, Drosophila, Government regulation, Statistical variance
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In the simplest view of transcriptional regulation, the expression of a gene is turned on or off by changes in the concentration of a transcription factor (TF). We use recent data on noise levels in gene expression to show that it should be possible to transmit much more than just one regulatory bit. Realizing this optimal information capacity would require that the dynamic range of TF concentrations used by the cell, the input/output relation of the regulatory module, and the noise in gene expression satisfy certain matching relations, which we derive. These results provide parameter-free, quantitative predictions connecting independently measurable quantities. Although we have considered only the simplified problem of a single gene responding to a single TF, we find that these predictions are in surprisingly good agreement with recent experiments on the Bicoid/Hunchback system in the early Drosophila embryo and that this system achieves ∼90% of its theoretical maximum information transmission.
Proceedings of the National Academy of Sciences of the United States of America © 2008 National Academy of Sciences