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Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley M. Deacon, John Wooley, Scott A. Lesley, Ian A. Wilson, Bernhard Palsson, Andrei Osterman and Adam Godzik
New Series, Vol. 325, No. 5947 (Sep. 18, 2009), pp. 1544-1549
Published by: American Association for the Advancement of Science
Stable URL: http://www.jstor.org/stable/40301833
Page Count: 6
You can always find the topics here!Topics: Protein metabolism, Metabolism, Biochemistry, Simulations, Modeling, Genomics, Enzymes, Mathematical functions, Medical research, Databases
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Metabolic pathways have traditionally been described in terms of biochemical reactions and metabolites. With the use of structural genomics and systems biology, we generated a three-dimensional reconstruction of the central metabolic network of the bacterium Thermotoga marítíma. The network encompassed 478 proteins, of which 120 were determined by experiment and 358 were modeled. Structural analysis revealed that proteins forming the network are dominated by a small number (only 182) of basic shapes (folds) performing diverse but mostly related functions. Most of these folds are already present in the essential core (~30%) of the network, and its expansion by nonessential proteins is achieved with relatively few additional folds. Thus, integration of structural data with networks analysis generates insight into the function, mechanism, and evolution of biological networks.
Science © 2009 American Association for the Advancement of Science