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Reactome Array: Forging a Link between Metabolome and Genome
Ana Beloqui, María-Eugenia Guazzaroni, Florencio Pazos, José M. Vieites, Marta Godoy, Olga V. Golyshina, Tatyana N. Chernikova, Agnes Waliczek, Rafael Silva-Rocha, Yamal Al-ramahi, Violetta La Cono, Carmen Mendez, José A. Salas, Roberto Solano, Michail M. Yakimov, Kenneth N. Timmis, Peter N. Golyshin and Manuel Ferrer
New Series, Vol. 326, No. 5950 (Oct. 9, 2009), pp. 252-257
Published by: American Association for the Advancement of Science
Stable URL: http://www.jstor.org/stable/40328839
Page Count: 6
You can always find the topics here!Topics: Enzymes, Metabolism, Cellular metabolism, Protein metabolism, Genomes, Dyes, Libraries, Metagenomics, Nanoparticles, Enzyme substrates
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We describe a sensitive metabolite array for genome sequence-independent functional analysis of metabolic phenotypes and networks, the reactomes, of cell populations and communities. The array includes 1676 dye-linked substrate compounds collectively representing central metabolic pathways of all forms of life. Application of cell extracts to the array leads to specific binding of enzymes to cognate substrates, transformation to products, and concomitant activation of the dye signals. Proof of principle was shown by reconstruction of the metabolic maps of model bacteria. Utility of the array for unsequenced organisms was demonstrated by reconstruction of the global metabolisms of three microbial communities derived from acidic volcanic pool, deep-sea brine lake, and hydrocarbon-polluted seawater. Enzymes of interest are captured on nanoparticles coated with cognate metabolites, sequenced, and their functions unequivocally established.
Science © 2009 American Association for the Advancement of Science